PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464701.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 555aa    MW: 62458.1 Da    PI: 5.4892
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464701.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.63.6e-21124220199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f+kvlt sd++++  l++ ++ a ++   +k+ +  +l+ +d++g +W++ + +r++++r++ltkGW++Fv +++L +gD+v+F   + +++el+
  XP_016464701.1 124 FCKVLTASDTNSNWGLTVRREDAIKCfpPLKPIQ--ELIAKDLNGSEWQFCHVFRGQPRRHLLTKGWSKFVASKRLVAGDSVIFL--RGENGELC 214
                     99************************98666555..8************************************************..449999** PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     v+v+r+
  XP_016464701.1 215 VGVRRQ 220
                     ***996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-32118233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-24119222IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-23123219No hitNo description
PROSITE profilePS5086311.829124221IPR003340B3 DNA binding domain
PfamPF023626.3E-19124220IPR003340B3 DNA binding domain
SMARTSM010198.5E-18124221IPR003340B3 DNA binding domain
PfamPF052785.1E-7397536IPR007942Phospholipase-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MDGEIGSSHH QQENHVLVEG DYMYKELWKA CADPIMDLPK LGERVYYFPM NHMELLKESA  60
DQIIPLFDLP TDILCRVINI QLMVEPDTDE VYAHITLLPE ENQSDQTTPD AWSPQPLNSQ  120
FQSFCKVLTA SDTNSNWGLT VRREDAIKCF PPLKPIQELI AKDLNGSEWQ FCHVFRGQPR  180
RHLLTKGWSK FVASKRLVAG DSVIFLRGEN GELCVGVRRQ AHRRHNIGSS PVSSQTVQGV  240
LAVVSHAFAT KRLFSVYYQP RKSRFILSLS KYLEPNREKP SNQDLAQIAS NGLSTNQASV  300
DVLDCDVFGD IFLAAHPLFL ENTPESNGNC VGVASTVQNF EGWPEPQRES FTTYPQQPIP  360
EPSATISTLQ PTDTLQVMCT YSTPRQLPTE GSGFGSEQVS WAGYQVAQQY VPILSRVIMR  420
YPSTISGFKA ITGALQSVYL EMLATLVDLL EKSRIGSMDN RNQFQVIKQY LADLKFIGID  480
ISWIETRLAQ IDEVLKMEKL IQHQHTLARK IDETQFTLGQ LNQELGSVRK ELEELTPKVG  540
PSPPSKDCSI LEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-9652791287Auxin response factor 1
4ldw_A2e-9652791287Auxin response factor 1
4ldw_B2e-9652791287Auxin response factor 1
4ldx_A2e-9652791287Auxin response factor 1
4ldx_B2e-9652791287Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464701.10.0PREDICTED: uncharacterized protein LOC107787619 isoform X2
SwissprotQ8L7G05e-94ARFA_ARATH; Auxin response factor 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.22e-95auxin response factor 1